This file will be parsed to retrieve transcript model information.
FPKM tracking files; Count tracking files; Read group tracking files; Differential expression tests; Differential splicing tests - splicing.diff; Differential coding output - ...
Supplementary_files_format_and_content: Tab-delimited text files are
Path to .gtf file used in cuffdiff analysis. This file will
... output files you actually want? resultfiles := final_reformat_genes. read_group_tracking reformat_read_group_tracking: $(foreach d,$(resultfiles),\ $(patsubst % ...
Using Picard Tools, the alignment files were sorted by genomic
Hello Biostars,. I'm trying to use cuffnorm to normalize the cuffquant results. I'm getting these output files: cds.count_tracking; cds.read_group_tracking; genes.
Read Group Tracking Files: record per-replicate expression and count data for an object with a unique tracking_id, including genes.read_group_tracking, ...
genes.read_group_tracking.tsv: Gene read group tracking. Tracks ...
... *.read_group_tracking files produced by cuffdiff2. Generates a multidimensional scaling (MDS) plot of a read_group_tracking output file from cuffdiff ver2.