When I apply the tabiz command: Tabix -p vcf file1.vcf.gz the following error appears: [ti_index_core] the file out of order at line 8. I had previous errors because I ...
t1 > > > > then bgzip and tabix, I got this error. > > ~/bin/tabix -s 1 -b 2 -e 3 genePosition.gz > > [ti_index_core] the file out of order at line 88 > ...
cat z.vcf | vcf-sort > out.vcf bgzip out.vcf tabix -p vcf out.vcf.gz. [ti_index_core] the file out of order at line 19. Here is the first 19 lines: head -19 out.vcf ...
[ti_index_core] the indexes overlap or are out of bounds. It's the 1st line of my file and I don't really understand the error, my file only contains contacts for chr3R ...
thanks, but now there is one error: [ti_index_core] the file out of order at line 19. this is line 19 : ctgA example SNP 1000 1000 0.987 .
[get_intv] the following line cannot be parsed and skipped: browser position
tabix error on Mac Bioinformatics.
Tabix indexes a TAB-delimited genome position file in.tab.bgz and creates an
This table summarizes the command-line arguments that are specific to this tool. ... false, If specified, do not check the sequence dictionaries from our inputs
With multiple files works as a switch on the command line, see the example