... names in a particular order in a VCF file and in a PLINK output (BED or PED). ... though, you'll need to run PLINK twice, once with --indiv-sort + --make-bed, and then once with --recode vcf using the newly sorted fileset.).
For example: bedtools intersect -abam reads.bam -b genes.bed -bed
I'm currently using bedtools 2.25 because groupBy is broken in the latest 2.26 release (#435). Since the benefits of
the remaining left or right half (decided by dictionary order), parse and test again.
of features are actually described relative to a particular reference sequence.
samtools – Utilities for the Sequence Alignment/Map (SAM) format
Music Files In A Particular Order Android : Useful Links. Related searches. burn files in a particular order win 10 · sort bed file in a particular order · files means ...
bioinformatics.stackexchange.com
Although you don't mention it, I'm guessing you're using bedtools v2.26.0.
Custom annotation files must be prepared in a particular way in order to work
Unless you use the -sorted option, bedtools currently does not support chromosomes