.org/en/latest/content/tools/intersect.html#g -define-an-alternate-chromosome-sort-order-via-a-genome-file.
ERROR: Sort order was unspecified, and file sorted.bam is not sorted lexicographically. Please re-reun [sic] with the -g option for a genome file.
ERROR: Sort order was unspecified, and file Acoerulea_322_v3_Vs_Hel_phmmert_l20.GFF3 is not sorted lexicographically. Please rerun with ...
ERROR: Sort order was unspecified, and file
Does a BED file have to be sorted position? LauraSmith, Bioinformatics, 3, 05-21- 2013 12:54 PM.
GATK wants the BAM file sorted in karyotypic order.
c" echo \ "ERROR: Sort order was unspecified, and file q1a_num.bed is not sorted lexicographically. Please re-reun with the -g option for a ...
By default, bedtools sort sorts a BED file by chromosome and then by start position in ascending order. For example: cat A.bed chr1 800 1000 ...
"ERROR: Sort order was unspecified, and file sq1.bed is not sorted lexicographically. Please re-reun with the -g option for a genome file.
If you don't specify a sort order, then the DIR command lists the files in the order that